Gene Regulation Ontology

The BOOTStrep Ontology is a conceptual model for the domain of gene regulation. It covers processes that are linked to the regulation of gene expression as well as physical entities that are involved in these processes (such as genes and transcription factors) in terms of ontology classes and semantic relations between classes. GRO is intended to represent common knowledge about gene regulation in a formal way rather than representing extremely fine-grained classes as can be found in ontologies such as the Gene Ontology (GO) (created for data base annotation purposes) and various relevant databases. The main purpose of the ontology is to support NLP applications. It has a particular focus on the relations between processes and the molecules (participants) involved. The basic structure of the GRO is a direct acyclic graph (DAG) with ontology classes as nodes and is-a relations between classes as edges. The taxonomic backbone is further enriched by several semantic relation types (part-of, from-species, participates-in with the two sub-relations agent-of and patient-of).

Data a zdroje

Doplňující informace

Pole Hodnota
Zdroj http://bioportal.bioontology.org/ontologies/1106
Autor Vivian Lee
Správce BioPortal project on behalf of ontology owner.
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links:bioportal-cco 70
links:bioportal-chebi 21
links:bioportal-chem2bio2owl 17
links:bioportal-cpr 10
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links:bioportal-ddi 21
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links:bioportal-ep 19
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links:bioportal-go_x2 111
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links:bioportal-ixno 11
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links:bioportal-nif 184
links:bioportal-nif_cell 24
links:bioportal-nif_dysfunction 24
links:bioportal-nigo 63
links:bioportal-npo 37
links:bioportal-obi 29
links:bioportal-odgi 21
links:bioportal-ogi 25
links:bioportal-pato 12
links:bioportal-phare 23
links:bioportal-rcd 35
links:bioportal-rid 14
links:bioportal-sao 21
links:bioportal-sbo 21
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published-via http://sparql.bioontology.org
sparql-named-graph http://bioportal.bioontology.org/ontologies/BOOTSTREP
triples 5210

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